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Quantitative Analysis of Intercellular Communication from Live Cell Imaging

The Jena School for Microbial Communication (JSMC) is funded by the German Excellence Initiative. JSMC is an ambitious Graduate School with over 150 doctoral researchers who are educated in a structured, interdisciplinary training program based on top-level fundamental research. It conceptionally combines different research areas to a comprehensive picture of microbial communication (www.jsmc.uni-jena.de). Institutes at five faculties of the Friedrich Schiller University Jena, six non-university research institutes as well as 12 partner companies are participating in this cutting-edge research and training program.
The Graduate School of Excellence ‘JSMC’ invites applications for a
Doctoral Researcher Position TV-L E13 65% (Ref.No. 111/2015)
to conduct research on the project:

Quantitative Analysis of Intercellular Communication from Live Cell Imaging
Studies of intercellular communication are nowadays routinely performed using live cell imaging techniques that allow visualizing processes in real-time and recording quantitative information on dynamical, functional and morphological aspects at the cellular level. The objective of this project is to develop novel computer algorithms that enable the automated quantification of cell migration , cell shape dynamics and cell activity from time-lapse microscopy videos of confrontation assays.

More project details here:

We expect:
  • a Master’s degree (or equivalent) in Natural Sciences (e.g. in Physics, Bioinformatics or Computer Science). Candidates about to earn their degree are welcome to apply.
  • desirable methodological skills: experience in object-oriented programming, preferentially in C++, knowledge in image processing and a background in mathematical modeling
  • high motivation and interest to join one of the interdisciplinary research areas of JSMC
  • creativity and interest to shape your own thesis project
  • an integrative and cooperative personality with enthusiasm for actively participating in the lively JSMC Community
  • very good communication skills in English (instruction language at JSMC)
We offer:
  • a highly communicative atmosphere within a scientific network providing top-level research facilities
  • a doctoral researcher position (TV-L E13, 65%) with guaranteed funding for two years based on the regulations of the German Research Foundation as well as generous research funding with the possibility of extended funding for one full additional year
  • a comprehensive mentoring program with supervision by a team of advisors
  • a top-level PhD training program with courses in state-of-the-art research technologies and soft skills
  • Jena –City of Science: a young and lively town with dynamic business activities, successful scientific centers of innovation and a vibrant cultural scene around the famous Friedrich Schiller University
Friedrich Schiller University Jena is an equal opportunity employer.
The application procedure takes place exclusively online via the JSMC website:


Please acquaint yourself with the open PhD projects and the application process described on this website.
Selected applicants will be invited to the JSMC Recruitment Meeting in Jena, Germany, on May 11th-13th, 2015. Awarding decisions will be made shortly thereafter, allowing the projects to start immediately.

Application deadline: March 13th, 2015 

Contact detail

How to apply:
Online: https://www.uni-jena.de/jsmc_online_application/
Send application to

Job profile

Working hours
Contract duration
Type of job
PhD Project
Work experience
job experience is not required
Germany (Thüringen)
Working place
07743 Jena
Area of expertise
Computer Sciences, Biotechnology, Biology & Life Sciences, Mathematics